Accelerating Pine Genomics Mississippi Genome Exploration Laboratory

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  Coming Soon!   CHOUVARINE P, COOKSEY AM, MCCARTHY FM, RAY DA, BALDWIN BS, BURGESS SC, PETERSON DG (2011) Transcriptome-based differentiation of closely-related Miscanthus lines. PLoS ONE, doi:10.1371/journal.pone.0029850.  
         
  PDF   LIU W, THUMMASUWAN S, SEHGAL SK, CHOUVARINE P, PETERSON DG (2011) Characterization of the bald cypress genome. BMC Genomics 12: 553.  
         
  PDF   MAGBANUA ZV, OZKAN S, BARTLETT BD, CHOUVARINE C, SASKI CA, LISTON AI, CRONN RC, NELSON CD, PETERSON DG (2011) Adventures in the enormous: A 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine. PLoS ONE 6: e16214.  
         
  PDF   LIN L, PIERCE G, BOWERS JE, ESTILL JC, COMPTON RO, RAINVILLE LK, KIM C, LEMKE C, RONG J, TANG H, WANG X, BRAIDOTTI M, CHEN AH, CHICOLA K, COLLURA K, EPPS E, GOLSER W, GROVER C, INGLES J, KARUNAKARAN S, KUDRNA D, OLIVE J, TABASSUM N, UM E, WISSOTSKI M, YU Y, ZUCCOLO A, MEHBOOB UR RAHMAN, PETERSON DG, WING RA, WENDEL JF, PATERSON AH (2010) A Draft Physical Map of a D-genome Cotton Species (Gossypium raimondii). BMC Genomics 11: 395.  
         
  PDF   GUERRERO FD, MOOLHUIJZEN P, PETERSON DG, BIDWELL S, CALER E, BELLGARD M, NENE VM, DJIKENG A (2010) Reassociation kinetics-based approach for partial genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus. BMC Genomics 11: 374.  
         
  Request reprint   PATERSON AH, RONG J-K, GINGLE AR, CHEE PW, DENNIS ES, LLEWELLYN D, DURE III LS, HAIGLER C, MYERS GO, PETERSON DG, MEHBOOB UR RAHMAN, ZAFAR Y, REDDY U, SARANGA Y, STEWART JM, UDALL JA, WAGHMARE VN, WENDEL JF, WILKINS TA, WRIGHT RJ, ZAKI E, HAFEZ EE, ZHU J (2010) Sequencing and utilization of the Gossypium genomes. Tropical Plant Biology 3: 71-74.  
         
  PDF   SHAN X, RAY DA, BUNGE JA, PETERSON DG (2009) A bacterial artificial chromosome library for the Australian saltwater crocodile (Crocodylus porosus) and its utilization in gene isolation and genome characterization. BMC Genomics 10(Suppl): S9.  
         
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reprint		   BUNGE JA, CHOUVARINE P, PETERSON DG (2009) CotQuest: Improved algorithm and software for nonlinear regression analysis of DNA reassociation kinetics data.  Analytical Biochemistry 388: 322-330.  
         
  PDF   MORSE AM, PETERSON DG, ISLAM-FARIDI MN, SMITH KE, MAGBANUA ZV, GARCIA SA, KUBISIAK TL, AMERSON HV, CARLSON JE, NELSON CD, DAVIS JM (2009) Evolution of Genome Size and Complexity in Pinus. PLoS ONE 4: e4332.  
         
  PDF   SAHA S, BRIDGES S, MAGBANUA Z, PETERSON DG (2008) Discovering relationships among dispersed repeats using spatial association rule mining. BMC Bioinformatics 9: O4.  
         
  PDF   SAHA S, BRIDGES S, MAGBANUA ZV, PETERSON DG (2008) Empirical comparison of ab initio repeat finding programs. Nucleic Acids Research 36: 2284-2294.  
         
  PDF   SAHA S, BRIDGES S, MAGBANUA ZV, PETERSON DG (2008) Computational approaches and tools used in identification of dispersed repetitive DNA sequences. Tropical Plant Biology 1: 85-96.  
         
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reprint		   CHOUVARINE P, SAHA S, PETERSON DG (2008) An automated, high-throughput sequence read classification pipeline for preliminary genome characterization.  Analytical Biochemistry 373: 78-87.  
         
  PDF   ISLAM-FARIDI MN, NELSON CD, KUBISIAK TL (2007) Reference karyotype and cytomolecular map for loblolly pine (Pinus taeda L.). Genome 50: 241-251.  
         
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reprint		   BLAKEY CA, COSTICH D, SOKOLOV V, ISLAM-FARIDI MN (2007) Tripsacum genetics: From observations along a river to molecular genomics. Maydica 52: 81-99.  
         
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reprint 		  PLOMION C, CHAGNÉ D, POT D, KUMAR S, WILCOX P, BURDON R, PRAT D, PETERSON DG, PAIVA J, CHAUMEIL P, VENDRAMIN G, SEBASTIANI F, NELSON CD, ECHT C, SAVOLAINEN O, KUBISIAK T, CERVERA MT, ISLAM-FARIDI (2007) The Pines. In: Genome Mapping and Molecular Breeding in Plants, Vol. 7, Forest Trees. Edited by: Kole CR. Springer - Heidelberg, Berlin, New York, Tokyo; pp. 29-78 (ISBN: 978-3-540-34540-4).  
 
  PDF   DENNIS JH, FAN H-Y, REYNOLDS SM, YUAN G, MELDRIM JC, RICHTER DJ, PETERSON DG, RANDO OJ, NOBLE WS, KINGSTON RE (2007) Independent and complementary methods for large-scale structural analysis of mammalian chromatin. Genome Research 17: 928-939. Click here for Online Supplementary Material.  
 
  PDF   BUNGE J, EPSTEIN SS, PETERSON DG (2006) Comment on "Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil" Science 313: 918.  Click here for Supporting Online Material.  
 
  PDF   LAMOUREUX D, PETERSON DG, LI W, FELLERS JP, GILL BS (2005) The efficacy of Cot-based gene enrichment in wheat (Triticum aestivum L.).  Genome 48: 1120-1126.  
 
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Reprint 		  PETERSON DG (2005) Reduced representation strategies and their application to plant genomes.  In: The Handbook of Plant Genome Mapping: Genetic and Physical Mapping. Edited by: Meksem K, Kahl G. WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany. pp. 307-335 (ISBN: 978-3-527-31116-3).  
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*This material is based upon work supported by the National Science Foundation under Grant No. DBI-0421717.  Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.